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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|82946257|82984876|-|4|circRNA|LIN54|ENST00000340417.7|5,4,3,2 | circLIN54(5,4,3,2) | LIN54 | LLPMSSRFKCLEASFIMSDLLLPHQPVAQPSQLVRIPVQTLSLFSKCLINFLAGERSWRWCQLR | IPVQTLSLFSKCLINFLAGER | No | Junction | Junction | 21 | 2 | CTG | TGA | TransCirc | No |
chr4|83094677|83107950|-|3|circRNA|PLAC8|ENST00000311507.8|4,3,2 | circPLAC8(4,3,2) | PLAC8 | LLLRPCTENASSGAGGRCDPTWSRSRSGPPELQLADRHV | SRSGPPELQLADR | No | Alternative | Alternative | 13 | 2 | CTG | TGA | NA | No |
chr4|83581561|83590292|+|4|circRNA|AGPAT9|ENST00000611707.4|4,5,6,7 | circAGPAT9(4,5,6,7) | AGPAT9 | LTTDGCYAMVLSKEMSHPWKKGSLVYEEGTLSCLTCFISPRRDWKPL | LTTDGCYAMVLSKEMSHPWK | No | Junction | Junction | 20 | 2 | TTG | TAG | TransCirc | No |
chr4|84683942|84709347|-|12|circRNA|WDFY3|NM_014991|63,62,61,60,59,58,57,56,55,54,53,52 | circWDFY3(63,62,61,60,59,58,57,56,55,54,53,52) | WDFY3 | LLLHVGDERMGHAERHSDRTLRWSGSDLGYLALWLERSL | MGHAERHSDR | No | Alternative | Junction | 10 | 3 | CTG | TGA | TransCirc | No |
chr4|85994582|85995657|+|1|circRNA|ARHGAP24|ENST00000395184.5|9 | circARHGAP24(9) | ARHGAP24 | LMTSRALTVLPGPLPPVKSPSLRTPTPVALLPPPAQSKTFLGGTLRTLFWMGPRRTTFPTPGTMKAKVTTGVWEVEVVVPPVAVTTVRHLWATAAATTVHCTV | ALTVLPGPLPPVKSPSLR | No | Alternative | Alternative | 18 | 1 | TTG | TAG | TransCirc | No |
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