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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|78369837|78407841|+|9|circRNA|FRAS1|ENST00000325942.10|23,24,25,26,27,28,29,30,31 | circFRAS1(23,24,25,26,27,28,29,30,31) | FRAS1 | LQTALQMKGSTCLMGGQLPPPAPSPSRTSMKASYGTGTQEPQPRATPSASSMQHTLWKL | GSTCLMGGQLPPPAPSPSRTSMK | No | Alternative | Junction | 23 | 1 | CTG | TGA | TransCirc | No |
chr4|7843138|7868719|-|3|circRNA|AFAP1|NM_001134647|5,4,3 | circAFAP1(5,4,3) | AFAP1 | MSRMMKRRRMGRGRKPGTSGPPRRPPWTWSRTPKSAPSCCGRSGSASGPSCSASSKTPNCWF | KPGTSGPPR | No | Alternative | Junction | 9 | 1 | ATG | TGA | NA | No |
chr4|8231975|8237670|+|4|circRNA|SH3TC1|ENST00000506360.5|12,13,14,15 | circSH3TC1(12,13,14,15) | SH3TC1 | LLPVPLPPADHEGCPVCPLPSRHARHLVGPCMCQAEWHIPFLLCPSHPHQPHGSVADEVPVPLPAACPLMPGIPRCCARVVCPLERGSPRQATCPSALWPRAWYTGVQPRGNALNAGSTALTLKRGGHRRQPGWARASVGGPGAQARSDSPR | ASVGGPGAQAR | No | Alternative | Alternative | 11 | 2 | CTG | TAG | NA | No |
chr4|8231975|8237670|+|4|circRNA|SH3TC1|ENST00000506360.5|12,13,14,15 | circSH3TC1(12,13,14,15) | SH3TC1 | LPGPTLCQSSASRSAGQEPKQLPDFPGLLSRQAHLPSWLPRPAVGHSPRSFTQCRAPCLAELCFLCLFPLLTTRAAQCALCLPDMPDISLVPACARLSGTFPFSCALPTLINHTALWLMKSQFPFQQPAP | LPGPTLCQSSASR | No | Alternative | Alternative | 13 | 3 | CTG | TAA | NA | No |
chr4|8231975|8237670|+|4|circRNA|SH3TC1|ENST00000506360.5|12,13,14,15 | circSH3TC1(12,13,14,15) | SH3TC1 | LPGPTLCQSSASRSAGQEPKQLPDFPGLLSRQAHLPSWLPRPAVGHSPRSFTQCRAPCLAELCFLCLFPLLTTRAAQCALCLPDMPDISLVPACARLSGTFPFSCALPTLINHTALWLMKSQFPFQQPAP | SAGQEPKQLPDFPGLLSR | No | Alternative | Alternative | 18 | 3 | CTG | TAA | NA | No |
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