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Circular RNA Associated Neoantigens (CRANS)
Use criteria below to search among 914 CRANS:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Neoantigen | Kmer Length | CircRNA Input Peptide | Gene | Oncogenic Driver | Passing Algorithms | No. of Passing Algorithms | Best Combined HLA Alleles |
|---|---|---|---|---|---|---|---|---|---|
chr19|34379517|34393771|4|45,54,61,44|0,1948,13730,14210 | NA | LTGCLLQW | 8 | GLTGCLLQWR | GPI | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket | 6 | HLA-B*58:01 |
chr19|34399206|34399631|2|129,76|0,349 | circGPI(NE,NE) | LVDPPGQLL | 9 | LTPFMLGALVDPPGQLLGPDRGPDEGK | GPI | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC,HLAthena | 9 | HLA-C*05:01 |
chr19|35730341|35730616|2|121,79|0,196 | circKMT2B(NE,NE).A | TARDGSSPL | 9 | TARDGSSPLATR | KMT2B | No | MHCflurry,NetMHCcons,NetMHCpan,PickPocket,HLAthena | 5 | HLA-C*03:02,HLA-B*46:01 |
chr19|3653289|3667353|3|75,60,32|0,11565,14032 | circPIP5K1C(L1L,NE,NE) | LAMGRSWAI | 9 | LAMGRSWAIEVTCPR | PIP5K1C | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC | 8 | HLA-B*08:01 |
chr19|38880820|38889323|6|77,56,60,130,69,70|0,279,611,2806,8266,8433 | circSIRT2(NE,NE,NE,NE,NE,NE) | HLLHITLRQR | 10 | HLLHITLRQR | SIRT2 | No | MHCflurry,MHCnuggetsI,NetMHCcons,NetMHCpan,PickPocket | 5 | HLA-A*33:03 |
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