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Circular RNA Associated Neoantigens (CRANS)
Use criteria below to search among 914 CRANS:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Neoantigen | Kmer Length | CircRNA Input Peptide | Gene | Oncogenic Driver | Passing Algorithms | No. of Passing Algorithms | Best Combined HLA Alleles |
|---|---|---|---|---|---|---|---|---|---|
chr17|44780709|44780876|1|167|0 | circADAM11(NE) | MQEEVGKGGLM | 11 | MQEEVGKGGLMDDPR | ADAM11 | No | MHCnuggetsI,NetMHCcons,NetMHCpan,PickPocket | 4 | HLA-B*15:03 |
chr17|45158144|45158342|1|198|0 | circENST00000452741(NE) | SLSGCPLVV | 9 | MRISLSGCPLVVAVK | ENST00000452741 | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC | 8 | HLA-A*02:01 |
chr17|47957581|47957822|1|241|0 | circPRR15L(L1S) | ASGASGLLY | 9 | EASGASGLLYQARLSQER | PRR15L | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,SMM,SMMPMBEC | 7 | HLA-A*29:02 |
chr17|48112030|48113401|3|33,87,101|0,543,1270 | NA | APGTLMWII | 9 | APGTLMWIIR | SNX11 | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC | 8 | HLA-B*53:01 |
chr17|4816617|4817289|2|336,61|0,611 | circPLD2(NE,S1L) | TTNSSGWAR | 9 | AQTHQPPQTSLTTNSSGWAR | PLD2 | No | MHCflurry,NetMHCcons,NetMHCpan,PickPocket | 4 | HLA-A*33:03 |
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