top of page
Circular RNA Associated Neoantigens (CRANS)
Use criteria below to search among 914 CRANS:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Neoantigen | Kmer Length | CircRNA Input Peptide | Gene | Oncogenic Driver | Passing Algorithms | No. of Passing Algorithms | Best Combined HLA Alleles |
|---|---|---|---|---|---|---|---|---|---|
chr15|65581953|65595825|3|66,87,93|0,11532,13779 | circINTS14(NE,NE,NE) | VLASLMTMK | 9 | WVLASLMTMKMK | INTS14 | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC | 8 | HLA-A*03:01 |
chr15|67124714|67124877|1|163|0 | circENST00000540846(NE) | LEGLEEKMW | 9 | NLSALCLNEGHLEGLEEKMWHR | ENST00000540846 | No | MHCflurry,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC | 7 | HLA-B*44:02 |
chr15|67190590|67190788|1|198|0 | NA | TLLNPLLSRK | 10 | IGTLLNPLLSRK | SMAD3 | Yes | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC,HLAthena | 9 | HLA-A*03:01 |
chr15|67190590|67190788|1|198|0 | NA | LLNPLLSR | 8 | IGTLLNPLLSRK | SMAD3 | Yes | HLAthena | 1 | HLA-A*03:01 |
chr15|67190590|67190788|1|198|0 | NA | TLLNPLLSR | 9 | IGTLLNPLLSRK | SMAD3 | Yes | HLAthena | 1 | HLA-A*03:01 |
Page 1 of 1
bottom of page