top of page
Circular RNA Associated Neoantigens (CRANS)
Use criteria below to search among 914 CRANS:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Neoantigen | Kmer Length | CircRNA Input Peptide | Gene | Oncogenic Driver | Passing Algorithms | No. of Passing Algorithms | Best Combined HLA Alleles |
|---|---|---|---|---|---|---|---|---|---|
chr1|53803927|53806517|2|75,160|0,2430 | circNDC1(S9,10L).A | FLFNHHLQK | 9 | LMCFLFNHHLQK | NDC1 | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC | 8 | HLA-A*03:01 |
chr1|66372436|66372706|1|270|0 | NA | WTSRTGTAR | 9 | VPHHHWTSRTGTAR | PDE4B | No | MHCflurry,NetMHCcons,NetMHCpan,PickPocket | 4 | HLA-A*33:03 |
chr1|78277616|78277786|1|170|0 | circT013643(NE) | GTNASEHCPNK | 11 | AGTNASEHCPNK | T013643 | No | MHCflurry,MHCnuggetsI,NetMHCcons,NetMHCpan,PickPocket,SMM | 6 | HLA-A*11:01 |
chr1|84865380|84866138|2|104,32|0,726 | circLPAR3(S1S,L2S) | VMTVLGRMF | 9 | TVMTVLGRMFTSPQ | LPAR3 | No | MHCflurry,MHCnuggetsI,NetMHC,NetMHCcons,NetMHCpan,PickPocket,SMM,SMMPMBEC | 8 | HLA-B*15:03 |
chr1|84865380|84866138|2|104,32|0,726 | circLPAR3(S1S,L2S) | TVMTVLGR | 8 | TVMTVLGRMFTSPQ | LPAR3 | No | HLAthena | 1 | HLA-A*03:01 |
Page 1 of 1
bottom of page