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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|101428468|101430897|3|55,212,122|0,1286,2307 | circALDOB(NE,NE,NE) | ALDOB | LQEQTKKPPFKTCHHGPPISSPHPGAEEGALRNCPEHCCQWKGDPGCR | KPPFKTCHHGPPISSPHPGAEEGALR | No | Junction | Junction | 26 | 3 | TTG | TGA | TransCirc | No |
chr9|101428468|101430897|3|55,212,122|0,1286,2307 | circALDOB(NE,NE,NE) | ALDOB | MAHRFPALTQEQKKELSEIAQSIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILFSVDSSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQDLSPWPTDFQPSPRSRRRSSQKLPRALLPMERGSWLQMNL | LPRALLPMER | No | Alternative | Junction | 10 | 2 | ATG | TAG | TransCirc | No |
chr9|112250928|112252788|3|74,36,111|0,139,1749 | NA | PTBP3 | LKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCRLHSLRPSYW | MALDGQNIYNACCR | No | Junction | Junction | 14 | 1 | TTG | TGA | riboCIRC | Yes |
chr9|112403994|112418958|2|56,59|0,14905 | NA | HSDL2 | MYSFYHRCKPWHWQSGMAEEFKGEIAVNALWPKTGGWQDVQFLSQVQAVALAKWNGRRI | CKPWHWQSGMAEEFK | No | Alternative | Junction | 15 | 1 | ATG | TAA | TransCirc | Yes |
chr9|115078006|115078179|1|173|0 | NA | SLC30A7 | MPSISARGLNQVIKAVVSVTSRTQCQASGSRWSTGSRPL | MPSISARGLNQVIK | No | Alternative | Junction | 14 | 2 | ATG | TGA | TransCirc | Yes |
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