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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|40422173|40422377|1|204|0 | circSMAP2(NE).A | SMAP2 | LLNKSFGVWHPAQPLPKHEDLSVALCCTCPIAIPTSSPVLSWHQHLRSCWQKALKPHPLFLPLCLV | SFGVWHPAQPLPK | No | Alternative | Junction | 13 | 1 | TTG | TAG | NA | Yes |
chr1|40984820|40984991|1|171|0 | circCTPS1(2) | CTPS1 | LERYTSMSLTRNGKEITWGKLSKVRFLCWMMVGK | YTSMSLTR | No | Alternative | Junction | 8 | 1 | CTG | TAG | TransCirc | No |
chr1|41015868|41016054|1|186|0 | NA | SLFNL1 | MRAAERRTGTPSTWHMSRHPCGFNPDRPICVAKKLLSALSPNDLTFRKNGFPV | RTGTPSTWHMSR | No | Alternative | Junction | 12 | 1 | ATG | TGA | NA | No |
chr1|41070594|41075451|2|127,129|0,4728 | circSCMH1(NE,1L) | SCMH1 | LRSPASTAAPKLSWNINQGRGGVNQERSGRKPRTLLNPPPASPTTSTPEPDTSTVPQDAATIPSSAMQAPTVVIPKNPYPASDVNTEKPSIHSSTKTVLEHQPGQRGRKPGKKREETSDFAEPTTCLTNNQHS | LSWNINQGRGGVNQER | Yes | Alternative | Junction | 16 | 1 | CTG | TGA | TransCirc | No |
chr1|43308985|43309532|2|146,145|0,402 | circTIE1(L1,2) | TIE1 | LCSCPPRPLWSQRRPQLSSRCPAWFLRTVGSGSAVCPHLAAKTAGASRSM | TAGASRSM | No | Alternative | Junction | 8 | 1 | CTG | TGA | TransCirc | No |
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