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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8|60741258|60743097|2|45,50|0,1789 | circCHD7(S1,1S) | CHD7 | LPDTAGSKRIAPPITPEHPAESACASGPISRLCLTLQGPRE | LCLTLQGPR | Yes | Alternative | Junction | 9 | 2 | TTG | TAG | TransCirc | No |
chr8|60741258|60743097|2|45,50|0,1789 | circCHD7(S1,1S) | CHD7 | LPDTAGSKRIAPPITPEHPAESACASGPISRLCLTLQGPRE | LCLTLQGPRE | Yes | Alternative | Junction | 10 | 2 | TTG | TAG | TransCirc | No |
chr8|60741258|60743097|2|45,50|0,1789 | circCHD7(S1,1S) | CHD7 | LPDTAGSKRIAPPITPEHPAESACASGPISRLCLTLQGPRE | RIAPPITPEHPAESACASGPISR | Yes | Junction | Junction | 23 | 2 | TTG | TAG | TransCirc | Yes |
chr8|60741258|60743097|2|54,50|0,1789 | circCHD7(S1,1S).A | CHD7 | LPDTAGSKRIKEIAPPITPEHPAESACASGPISRLCLTLQGPRELKK | EIAPPITPEHPAESACASGPISR | No | Junction | Junction | 23 | 2 | TTG | TAG | TransCirc | Yes |
chr8|60741258|60743097|2|54,50|0,1789 | circCHD7(S1,1S).A | CHD7 | LPDTAGSKRIKEIAPPITPEHPAESACASGPISRLCLTLQGPRELKK | EIAPPITPEHPAESACASGPISRLCLTLQGPR | No | Junction | Junction | 32 | 2 | TTG | TAG | TransCirc | Yes |
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