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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|149014918|149019010|2|124,19|0,4073 | circPDIA4(L3S,S4S) | PDIA4 | MMQISFWWRLQNPGRNCCQGQRSLPARLDASTRSHACVDQREL | MMQISFWWRLQNPGR | No | Junction | Junction | 15 | 2 | ATG | TGA | TransCirc | Yes |
chr7|149014918|149019010|2|124,19|0,4073 | circPDIA4(L3S,S4S) | PDIA4 | MMQISFWWRLQNPGRNCCQGQRSLPARLDASTRSHACVDQREL | NCCQGQR | No | Alternative | Junction | 7 | 2 | ATG | TGA | TransCirc | No |
chr7|149014918|149019010|2|124,19|0,4073 | circPDIA4(L3S,S4S) | PDIA4 | MMQISFWWRLQNPGRNCCQGQRSLPARLDASTRSHACVDQREL | NCCQGQRSLPAR | No | Alternative | Junction | 12 | 2 | ATG | TGA | TransCirc | Yes |
chr7|149014918|149019010|2|124,19|0,4073 | circPDIA4(L3S,S4S) | PDIA4 | MMQISFWWRLQNPGRNCCQGQRSLPARLDASTRSHACVDQREL | SLPARLDASTR | No | Alternative | Junction | 11 | 2 | ATG | TGA | TransCirc | Yes |
chr7|149166816|149176581|2|114,114|0,9651 | circZNF398(NE,NE) | ZNF398 | LMSYLRFNQKGNIIQRTRQGQRKVRFPQTPVKSLVFQHQIFCLGLNKKKSLRLGPHRSPRRVTCTKALMLIML | ALMLIML | No | Alternative | Junction | 7 | 1 | CTG | TAA | TransCirc | No |
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