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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|100023418|100024307|3|21,168,154|0,346,735 | circZKSCAN1(S1S,S2,3) | ZKSCAN1 | LIYQDNRSQVKFMDLRCSQGGWCLWIQFRSPRALTFITRPPSPTSNIRLGNPASYSHEE | LIYQDNR | No | Alternative | Junction | 7 | 2 | TTG | TAG | riboCIRC | No |
chr7|100108366|100108540|1|174|0 | NA | TAF6 | LFWQSCAHRLTIRTPIGQNSGPLGPSSAPRWSRLGPRLLCRLSRSTGPL | LGPRLLCR | No | Alternative | Alternative | 8 | 2 | CTG | TGA | TransCirc | No |
chr7|100805571|100807449|3|123,150,85|0,848,1793 | circEPHB4(L1S,S2L,NE) | EPHB4 | LSHLPPPAHAGLLAERPECPAPLPPATSSAKCLTLAFPDSWRRTLPIPPTRAPWEERFPSDGLPRRPLPSGSSLPPVMPGVTGL | TLPIPPTR | No | Alternative | Junction | 8 | 1 | CTG | TGA | NA | No |
chr7|101156593|101157485|2|179,109|0,783 | circAP1S1(NE,L1) | AP1S1 | LAVCGSCYYSAGRENCGCKNGTWPLRTRNGRRWCASSCRLSWLESPRCAASWSGGTSKLSIRDMPASTSAAPSRAKTMSSSHWS | NGTWPLR | No | Alternative | Junction | 7 | 2 | TTG | TGA | TransCirc | No |
chr7|102273365|102273493|1|128|0 | circCUX1(NE) | CUX1 | LQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEDAVRSCKSVSLRLWPQPLSRES | LEQDLSIIQSIQRPDAEDAVR | No | Junction | Junction | 21 | 3 | CTG | TGA | TransCirc | Yes |
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