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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|31586363|31586800|1|437|0 | circTINAGL1(S3L) | TINAGL1 | LDPQVREGRWMCGPIELAPRRWVSGGPRFPPLLLTLPPLVPLVPHPLPCWAWVHRLTDVRVREMQRGTETCLSPKGVPNPPKATGGWMGQVSGIGAPESR | ATGGWMGQVSGIGAPESR | No | Alternative | Alternative | 18 | 1 | CTG | TAG | NA | Yes |
chr1|31586363|31586800|1|437|0 | circTINAGL1(S3L) | TINAGL1 | LDPQVREGRWMCGPIELAPRRWVSGGPRFPPLLLTLPPLVPLVPHPLPCWAWVHRLTDVRVREMQRGTETCLSPKGVPNPPKATGGWMGQVSGIGAPESR | EGRWMCGPIELAPR | No | Alternative | Alternative | 14 | 1 | CTG | TAG | NA | Yes |
chr1|32172244|32172399|1|155|0 | circKPNA6(NE) | KPNA6 | LSQDLKGARMASGPGEVCYSVLTAEHPACIRKLRSSLPSALEPS | GARMASGPGEVCYSVLTAEHPACIR | No | Alternative | Junction | 25 | 2 | TTG | TAA | NA | Yes |
chr1|32174363|32174539|1|176|0 | circKPNA6(NE).C | KPNA6 | MSSRMNCISISSCLPAFPPHPKVVLVSSKLEGKDRKAWHY | MNCISISSCLPAFPPHPK | No | Alternative | Alternative | 18 | 1 | ATG | TAA | NA | Yes |
chr1|32948221|32949774|2|46,163|0,1390 | circRNF19B(NE,NE).A | RNF19B | LSSATTASRYGIQIRHAIWPVNRGPRLYEFGPLLALYERDLRLALPQLCCYCLWLCQLPEANL | HAIWPVNRGPR | No | Alternative | Junction | 11 | 3 | CTG | TGA | TransCirc | Yes |
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