top of page
Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|7176654|7181246|2|119,123|0,4469 | circRREB1(NE,NE) | RREB1 | LPTFGPSQVQPPNKEGSLITQRKQCQRVLPREEDKRSTQTHFLLRVNDSYSRGKFHSLSVGQKMEVAPTVCSRSGGSEV | EGSLITQRK | No | Alternative | Junction | 9 | 3 | CTG | TGA | TransCirc | No |
chr6|7176654|7181246|2|119,123|0,4469 | circRREB1(NE,NE) | RREB1 | LPTFGPSQVQPPNKEGSLITQRKQCQRVLPREEDKRSTQTHFLLRVNDSYSRGKFHSLSVGQKMEVAPTVCSRSGGSEV | RSTQTHFLLR | No | Alternative | Junction | 10 | 3 | CTG | TGA | TransCirc | Yes |
chr6|7176654|7181246|2|119,123|0,4469 | circRREB1(NE,NE) | RREB1 | LPTFGPSQVQPPNKEGSLITQRKQCQRVLPREEDKRSTQTHFLLRVNDSYSRGKFHSLSVGQKMEVAPTVCSRSGGSEV | STQTHFLLR | No | Alternative | Junction | 9 | 3 | CTG | TGA | TransCirc | Yes |
chr6|7176654|7181246|2|119,123|0,4469 | circRREB1(NE,NE) | RREB1 | LPTFGPSQVQPPNKEGSLITQRKQCQRVLPREEDKRSTQTHFLLRVNDSYSRGKFHSLSVGQKMEVAPTVCSRSGGSEV | STQTHFLLRVNDSYSR | No | Alternative | Junction | 16 | 3 | CTG | TGA | TransCirc | Yes |
chr6|7176654|7181246|2|119,123|0,4469 | circRREB1(NE,NE) | RREB1 | LPTFGPSQVQPPNKEGSLITQRKQCQRVLPREEDKRSTQTHFLLRVNDSYSRGKFHSLSVGQKMEVAPTVCSRSGGSEV | VNDSYSRGK | No | Alternative | Junction | 9 | 3 | CTG | TGA | TransCirc | No |
Page 1 of 1
bottom of page