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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|34245506|34245694|1|188|0 | circHMGA1(NE).N | HMGA1 | LPSAWDLSTYCGDGDAVTYCPGEAQEPCGRHLRWAGAAPSPLRLQEGRRGESPTPSSLWPQPPCPPPGI | WAGAAPSPLR | No | Junction | Junction | 10 | 3 | TTG | TGA | NA | Yes |
chr6|35017614|35017823|1|209|0 | circANKS1A(S2S) | ANKS1A | MQLEETGVHAPGASQPSALDQSKRVGYLTGLPTTNSRSHPETLTHTASPHPLARAIQTGPPSRAPATRPACSWRRRVCMLLEPPSPVPWTRAREWATSQACPPPTAARTLKL | APATRPACSWR | Yes | Alternative | Junction | 11 | 2 | ATG | TGA | TransCirc | Yes |
chr6|35233154|35233348|1|194|0 | NA | SCUBE3 | MVTAAASTRVMTQSRVPGAAAISSLCSIPTGRHASVGEARGELSPPEMGWG | HASVGEAR | No | Alternative | Alternative | 8 | 1 | ATG | TGA | TransCirc | No |
chr6|43045890|43046185|1|295|0 | circCUL7(L6L) | CUL7 | LSTSSKWFFLPTPRQLTLLVASEDSSYMPARVVVCGGDSTSSLHTELNSVGPQGH | QLTLLVASEDSSYMPARVVVCGGDSTSSLHTELNSVGPQGH | No | Alternative | Alternative | 41 | 1 | CTG | TAG | NA | Yes |
chr6|43549892|43555964|4|42,156,131,129|0,1405,3480,5943 | NA | XPO5 | LIPRIPSSCPASLLMSLHSFHLSPTDQSSCPRSSLSYFHLSLLKLLKKVSLPSTTRRGDEVGMSFGSQN | VSLPSTTRR | No | Junction | Junction | 9 | 1 | TTG | TAG | TransCirc | Yes |
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