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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr6|138441982|138496371|3|107,87,153|0,31364,54236 | circNHSL1(NE,NE,5L) | NHSL1 | MRKADGQSTTLPRGTSRRMCSFPPQDPPVLRTCTAKPSSTSNQY | KADGQSTTLPR | Yes | Alternative | Alternative | 11 | 1 | ATG | TGA | TransCirc | Yes |
chr6|138447000|138496371|2|94,97|0,49274 | circNHSL1(NE,4S) | NHSL1 | MDSPLHCPVAPAGECVPSHHKTPWTKSLPLPTPEEKMRQQAQTVQADVVPINITAVSNLDEESRWTVHYTAPWHQQENVFLPTTRPPGPSRFHCQHQKRRCDSKPKQSRLTWCLLT | MRQQAQTVQADVVPINITAVSNLDEESR | No | Junction | Junction | 28 | 2 | ATG | TAA | NA | Yes |
chr6|138447000|138496371|2|94,97|0,49274 | circNHSL1(NE,4S) | NHSL1 | MRKADGQSTTLPRGTSRRMCSFPPQDPLDQVASTANTRREDATASPNSPG | RMCSFPPQDPLDQVASTANTR | No | Alternative | Junction | 21 | 1 | ATG | TGA | NA | Yes |
chr6|142421839|142422020|1|181|0 | NA | XM_017011085 | MCSVSLPFNLNFLSGRCFNIIKCAEICSENDSTIKTIK | MCSVSLPFNLNFLSGR | No | Alternative | Junction | 16 | 1 | ATG | TAA | NA | No |
chr6|154815715|154818514|2|105,36|0,2763 | circSCAF8(NE,NE) | SCAF8 | LKSLDRLNPLMQMIPPRGCAYVCMYVVLLSGLGKWTRRQHSKT | LNPLMQMIPPRGCAYVCMYVVLLSGLGK | No | Junction | Junction | 28 | 1 | TTG | TAA | NA | Yes |
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