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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr5|56864733|56865977|2|96,58|0,1186 | NA | MAP3K1 | MSNSHTLSSSSTSTSSSENSFRVAESHHPEEPLHQMASHHIALRKQTAVLTNVKFSYIVII | QTAVLTNVK | No | Alternative | Junction | 9 | 3 | ATG | TAG | TransCirc | Yes |
chr5|71643818|71649253|3|81,67,157|0,2392,5278 | circMCCC2(NE,NE,NE) | MCCC2 | LGAPMEPETMGCVAEHIGFARIFGYPVGIVGNNGVLFSESAKKARYSLCPVMLPKKYSSAVPSKHYWIYGW | LGAPMEPETMGCVAEHIGFAR | No | Junction | Junction | 21 | 2 | TTG | TAG | NA | Yes |
chr6|100112664|100163052|2|98,100|0,50288 | circT308625(NE,NE) | T308625 | LLEAMDHFMTVSIFLLDISILKSLKLLLFFLMQNMHVCSLCKPELSFYDL | LLLFFLMQNMHVCSLCKPELSFYDL | No | Alternative | Junction | 25 | 3 | TTG | TAG | NA | Yes |
chr6|108663454|108664889|2|169,132|0,1303 | circFOXO3(2S,S2) | FOXO3 | MRELARALGGSSTLMGGRAEKPPGGGLSPWTIATSIPRALIPSSPHRMLLV | ALGGSSTLMGGR | No | Alternative | Junction | 12 | 2 | ATG | TGA | TransCirc | No |
chr6|108663454|108664889|2|169,132|0,1303 | circFOXO3(2S,S2) | FOXO3 | MRELARALGGSSTLMGGRAEKPPGGGLSPWTIATSIPRALIPSSPHRMLLV | ALGGSSTLMGGRAEKPPGGGLSPWTIATSIPR | No | Alternative | Junction | 32 | 2 | ATG | TGA | TransCirc | Yes |
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