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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|56474139|56478616|5|58,112,32,125,25|0,140,2531,4239,4452 | circSRP72(NE,S1S,NE,NE,NE) | SRP72 | LGLQEGTHELCYNTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAENKPFSSCCSSKQLGKSGSREPGPPRRHT | SGSREPGPPR | No | Alternative | Junction | 10 | 2 | CTG | TGA | TransCirc | Yes |
chr4|69935572|69935745|1|173|0 | circENST00000633258.1(NE) | ENST00000633258.1 | LYLNVCLSKTLCSPFRDVCRGLQFPKLINPSLHSVIQTPRKNIKTRYVYVKELLYILICT | LINPSLHSVIQTPR | No | Alternative | Junction | 14 | 2 | TTG | TAA | NA | Yes |
chr4|87046165|87047594|2|173,31|0,1398 | circAFF1(NE,NE) | AFF1 | LSLYNDDRNLLRIREKERRNQEAHQEKEAFPEKIPLFGEPYKVFTEH | LSLYNDDR | Yes | Junction | Junction | 8 | 2 | TTG | TAG | riboCIRC,TransCirc | No |
chr4|87046165|87047594|2|173,31|0,1398 | circAFF1(NE,NE) | AFF1 | LSLYNDDRNLLRIREKERRNQEAHQEKEAFPEKIPLFGEPYKVFTEH | LSLYNDDRNLLR | Yes | Junction | Junction | 12 | 2 | TTG | TAG | riboCIRC,TransCirc | Yes |
chr5|10415487|10426522|2|46,133|0,10902 | circMARCHF6(NE,NE).A | MARCHF6 | LVNVVLDGDCQVYANGIRNIDLHYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLVFAGRWLMSFWTGTAKFTQMASGTLTFTILFVNWQLP | LVNVVLDGDCQVYANGIR | No | Alternative | Junction | 18 | 2 | TTG | TGA | TransCirc | Yes |
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