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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|2625261|2625395|1|134|0 | circFAM193A(1) | FAM193A | LVAPSQRPAVVGGSLWVHRRCLQTPHARARPAVSAEPRFSSSLLAWWLPARGRQWWEARSGCTDAAFRHRMLVRGLQ | SGCTDAAFRHR | No | Alternative | Junction | 11 | 2 | TTG | TGA | TransCirc | Yes |
chr4|2825354|2825648|2|143,101|0,193 | circENST00000505941.5(NE,NE).B | ENST00000505941.5 | MHTHRATRGHAHTHRATPTRRHAHTNTEQHTDMHTHTEHAQVCMHLSAPVYR | GHAHTHR | No | Alternative | Junction | 7 | 2 | ATG | TAA | NA | No |
chr4|2825354|2825648|2|143,101|0,193 | circENST00000505941.5(NE,NE).B | ENST00000505941.5 | MHTHRATRGHAHTHRATPTRRHAHTNTEQHTDMHTHTEHAQVCMHLSAPVYR | GHAHTHRATPTR | No | Alternative | Junction | 12 | 2 | ATG | TAA | NA | Yes |
chr4|2904919|2907844|2|96,102|0,2823 | circADD1(L1,NE) | ADD1 | LAGATKLPRKGRMEAVPSRRLSGLKRMDIELPPLLSLTCLFH | GRMEAVPSR | No | Alternative | Junction | 9 | 2 | CTG | TGA | NA | Yes |
chr4|2904919|2907844|2|96,102|0,2823 | circADD1(L1,NE) | ADD1 | LAGATKLPRKGRMEAVPSRRLSGLKRMDIELPPLLSLTCLFH | LAGATKLPR | No | Alternative | Junction | 9 | 2 | CTG | TGA | NA | No |
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