top of page
Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|123116230|123124343|4|52,46,92,72|0,7295,7835,8041 | circPDIA5(NE,NE,1,2) | PDIA5 | MSTPLNLKTSRRSTACAASPPSAILRKDGSCSSMTTMGPQLRTLWSG | RSTACAASPPSAILR | No | Alternative | Junction | 15 | 1 | ATG | TGA | riboCIRC,TransCirc | Yes |
chr3|128262127|128264781|2|97,34|0,2620 | circEEFSEC(NE,S1) | EEFSEC | LKLHRAFQSSLSLGDSVEIPALKVPRCTDYTRGGQAGGTRGPRN | GGQAGGTRGPR | Yes | Alternative | Junction | 11 | 3 | CTG | TGA | TransCirc | Yes |
chr3|128806371|128807671|2|219,129|0,1171 | NA | RAB7A | MSFSSRPVPEILKTSHLLCWETRLTSKTDKWPQSGHRPGATAKTTFPTLRPVPRRPSTWSRRSRRLHGMHLSRYGTQQDRNGSSLSVWPSTEVQTAAFWYLM | TTFPTLRPVPR | No | Alternative | Junction | 11 | 2 | ATG | TGA | riboCIRC,TransCirc | Yes |
chr3|149846010|149921227|3|33,106,94|0,65967,75123 | circRNF13(NE,NE,2).A | RNF13 | LSRIDIELEETDFVKINLRNFLYINSRKVILQRDAALHRGPPYLSSRI | IDIELEETDFVK | Yes | Alternative | Junction | 12 | 3 | TTG | TAG | TransCirc | Yes |
chr3|149846010|149921227|3|33,106,94|0,65967,75123 | circRNF13(NE,NE,2).A | RNF13 | LSRIDIELEETDFVKINLRNFLYINSRKVILQRDAALHRGPPYLSSRI | IDIELEETDFVKINLR | Yes | Alternative | Junction | 16 | 3 | TTG | TAG | TransCirc | Yes |
Page 1 of 1
bottom of page