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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|193212064|193212477|2|36,88|0,325 | NA | CDC73 | MLNAKDLLQDLNFSSKTSPKSEERISNTHYHNSCSYHLFNNHA | DLLQDLNFSSK | No | Junction | Junction | 11 | 3 | ATG | TAA | TransCirc | Yes |
chr1|201383150|201385805|4|61,73,44,105|0,166,1641,2550 | circLAD1(NE,NE,NE,S2L) | LAD1 | MSSPTQRTYSSSLKRSSPRTISFRMKPKKENSETTLTRSASMKLPDNTVKLGEKLERYHTAIRRSESVKSRGLPCTELFVAPVGENPQQGGRGRYVLTHTANLQQLPQTLQPQDHLLSDETQERKLGNNPNSQCQHEAPRQHSEVGREAGEIPHGHTEIRICQVSGSALH | EAGEIPHGHTEIR | No | Alternative | Junction | 13 | 1 | ATG | TGA | TransCirc | Yes |
chr1|202015222|202015376|1|154|0 | circELF3(S2S) | ELF3 | MAGDSSTSLAKTQAAGRRKRFSRVGTEGWNYTRDQTHGPLEACKREILERVDGRRLVYKFGKNSSGWKEEEVLQSRN | DQTHGPLEACKR | No | Junction | Junction | 12 | 1 | ATG | TGA | NA | Yes |
chr1|202133784|202133950|1|166|0 | circARL8A(NE) | ARL8A | MPQAGRGLWGPLPSTPSLGRATRLAPAAGTSLGTGGRLPVPCVSTAQSGLSWQCLNATGWQGPLGAPPLDPQPG | ATRLAPAAGTSLGTGGR | No | Junction | Junction | 17 | 3 | ATG | TAG | NA | Yes |
chr1|204112914|204114605|2|116,87|0,1604 | circSOX13(L1S,3) | SOX13 | MSKDVHEEPHLCPAGPGWRWHHGELHHQVRGEERALPRGPPGGASHREAVVQ | ALPRGPPGGASHR | No | Alternative | Junction | 13 | 3 | ATG | TGA | TransCirc | No |
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