top of page
Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|49009775|49009882|1|107|0 | circRUVBL2(NE) | RUVBL2 | LTLKTTEMETIYDLGTKMIESLTKDKVQAGAPRWAN | VQAGAPR | No | Alternative | Junction | 7 | 1 | CTG | TGA | TransCirc | No |
chr19|49556957|49557249|2|36,160|0,132 | circNOSIP(S1S) | NOSIP | LEKESAIVSRPLNPFTAKALSGTSPDDVQPGPSVGPPSLREAAGHPARGAEGASAGGLAGPCAGLPGEGVGYREPAPQPFHSQGPLGHQPR | EAAGHPAR | No | Alternative | Junction | 8 | 1 | CTG | TGA | TransCirc | No |
chr19|49651409|49651613|1|204|0 | circSCAF1(S4S).A | SCAF1 | LSGRQGLGGGGDRWWSRPPAAPAAARRLGDRGRGDRPAGGGAQAGAVLHPG | QGLGGGGDRWWSRPPAAPAAAR | Yes | Alternative | Junction | 22 | 3 | TTG | TGA | TransCirc | Yes |
chr19|49651409|49651613|1|204|0 | circSCAF1(S4S).A | SCAF1 | LVEPPSRRPCCRPATRRSRKGRSSSRRRSPGWRCPPPGLMEPCAGGSSWWGPRQRLVGKARSRWRW | LVEPPSR | Yes | Alternative | Junction | 7 | 2 | CTG | TGA | NA | No |
chr19|49860093|49860336|2|90,69|0,174 | circPTOV1(S1,L1S) | PTOV1 | MRPPQRLGNFVNGIRRVIANQQQVLQRNLEQEQQQRGMGG | MRPPQRLGNFVNGIR | No | Junction | Junction | 15 | 1 | ATG | TAG | NA | No |
Page 1 of 1
bottom of page