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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|40366772|40366915|1|143|0 | circPLD3(L1) | PLD3 | LGPTSAQPPAMTLAKSPLGPAGPHSGGCGLRSPDDSAVSMGIRRLASLWAQPAPSPLL | SPDDSAVSMGIRR | No | Alternative | Junction | 13 | 2 | TTG | TGA | NA | No |
chr19|41261269|41261488|1|219|0 | NA | AXL | LLHSASLGPWLRVQESTFLKSYSSRHCSSKTQMF | LLHSASLGPWLR | No | Alternative | Alternative | 12 | 3 | TTG | TAA | NA | Yes |
chr19|42290813|42290981|1|168|0 | circCIC(NE).A | CIC | LCPSPLSPSPPLAGLRRLQMTQQVPGLKWALGLGCLGAPRWVSA | LQMTQQVPGLK | No | Alternative | Alternative | 11 | 3 | CTG | TAG | NA | No |
chr19|42290813|42290981|1|168|0 | circCIC(NE).A | CIC | LCPSPLSPSPPLAGLRRLQMTQQVPGLKWALGLGCLGAPRWVSA | WALGLGCLGAPRWVSA | No | Alternative | Alternative | 16 | 3 | CTG | TAG | NA | No |
chr19|44907773|44908559|2|179,27|0,759 | circAPOE(NE,NE) | APOE | LRQQTEWQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKEWSKRWRQSRSPSCASRPSGRAASAGNWHWVAFGITCAGCRHCLSRCRRSCSAPRSPRN | SPSCASRPSGR | No | Alternative | Junction | 11 | 1 | CTG | TGA | NA | No |
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