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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|19334246|19334458|1|212|0 | circMAU2(S1S) | MAU2 | LSVPQEGTTGGRRLGWQRACGLGSCVWVHVCQGLGLSPTAVLLAPCVLAVAALDAALCFPSACDIPSPSPSCPCHKRGPQEADAWAGRGPVVWAPACGCMCVRGSGSLPQLSSWPPVSWQ | GPQEADAWAGRGPVVWAPACGCMCVR | No | Alternative | Junction | 26 | 1 | CTG | TAG | NA | Yes |
chr19|2039063|2039237|1|174|0 | NA | SLC30A7 | LSLKYCGLGGNTRAGSCAPPQLCKMANAVGLLSRDRQPLPSPTKPPGVLSG | AGSCAPPQLCKMANAVGLLSR | No | Junction | Junction | 21 | 2 | CTG | TGA | NA | Yes |
chr19|2353874|2354069|1|195|0 | NA | SPPL2B | MVATSRSPAGATWWGGRLSDCPSDKQGWAPGRLGQALRGPWSPGREGLGRGRCLAMPAHSSPF | GPWSPGR | No | Alternative | Junction | 7 | 2 | ATG | TAA | NA | No |
chr19|2785628|2790578|2|50,158|0,4792 | circTHOP1(S1,2S) | THOP1 | LCRRHGGRSISVLCGKRPAVGPECPADRGAHQGAHRADQARV | GAHQGAHR | Yes | Alternative | Alternative | 8 | 1 | CTG | TGA | TransCirc | No |
chr19|3209009|3209188|1|179|0 | circNCLN(NE) | NCLN | LGKSWPGTRSRLPSVAQGGVCCPKDLGRPMGAWGSVQIGPGGLTLATSSSASTSALQNLSWASPGLAPAAVSLPWPREVFAVRRTWAGPWEPGVLSR | SRLPSVAQGGVCCPK | No | Alternative | Junction | 15 | 3 | CTG | TAG | NA | Yes |
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