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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr19|1221212|1222006|2|128,58|0,736 | circSTK11(NE,NE) | STK11 | LSTNRPRGSPSGRSGSTATTSPRVCTPSKGTTSTSCLRTSGRGATPSRATVAPRSLTC | GATPSRATVAPR | No | Alternative | Junction | 12 | 3 | TTG | TGA | NA | Yes |
chr19|1273237|1273469|1|232|0 | circCIRBP(NE).C | CIRBP | LALVRVGEPGGGRERAAQASGQPWEASGSGGQRAGLCGQLSRDSGRAPDAEQREKVEKQRVCKPSLGPAELEREAQQTGAGQGRGARRGTGAGSSGLRAALGGFWQWWPEGWTVRAA | GTGAGSSGLR | No | Alternative | Junction | 10 | 1 | CTG | TAG | NA | No |
chr19|1273237|1273469|1|232|0 | circCIRBP(NE).C | CIRBP | LALVRVGEPGGGRERAAQASGQPWEASGSGGQRAGLCGQLSRDSGRAPDAEQREKVEKQRVCKPSLGPAELEREAQQTGAGQGRGARRGTGAGSSGLRAALGGFWQWWPEGWTVRAA | RGTGAGSSGLR | No | Alternative | Junction | 11 | 1 | CTG | TAG | NA | No |
chr19|17101659|17102557|2|64,157|0,741 | circMYO9B(S1,NE) | MYO9B | LPHRPQPEGLRQRRREDHPGCWPCAGAPGHARPEPGRHAEARRPAG | LPHRPQPEGLR | Yes | Alternative | Junction | 11 | 2 | CTG | TGA | riboCIRC,TransCirc | Yes |
chr19|17101659|17102557|2|64,157|0,741 | circMYO9B(S1,NE) | MYO9B | LPHRPQPEGLRQRRREDHPGCWPCAGAPGHARPEPGRHAEARRPAG | LPHRPQPEGLRQR | Yes | Alternative | Junction | 13 | 2 | CTG | TGA | riboCIRC,TransCirc | Yes |
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