top of page
Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr18|76849525|76851939|2|80,76|0,2338 | circZNF236(1,NE) | ZNF236 | MRRTLIMPIKFQTSINVKSVYCPVCNKKFSRVASLKAHIMLHEKEEMEF | TLIMPIK | No | Alternative | Junction | 7 | 1 | ATG | TAA | NA | No |
chr18|9931809|9954160|3|140,52,108|0,18707,22243 | circVAPA(NE,NE,S1S) | VAPA | LTQGQLRLQGEMMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVAPSQM | LTQGQLR | No | Alternative | Junction | 7 | 1 | TTG | TAG | TransCirc | No |
chr18|9931809|9954160|3|140,52,108|0,18707,22243 | circVAPA(NE,NE,S1S) | VAPA | LTQGQLRLQGEMMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVAPSQM | VAHSDKPGSTSTASFRDNVTSPLPSLLVAPSQM | No | Junction | Junction | 33 | 1 | TTG | TAG | TransCirc | Yes |
chr19|10679096|10679927|2|96,112|0,719 | circILF3(L1,2) | ILF3 | LKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPGQSQRAEVLCHCDPGLEGPVHSRAHLGSPPRLASRAPV | VLECLASGIVMPGQSQR | No | Junction | Junction | 17 | 1 | CTG | TGA | TransCirc | Yes |
chr19|10795371|10805967|3|68,40,30|0,689,10566 | circDNM2(NE,NE,NE) | DNM2 | LTRRTYDGRSAMPLRTSMESGPGFSPRTWHSRPF | SAMPLRTSMESGPGFSPR | No | Alternative | Junction | 18 | 2 | TTG | TGA | TransCirc | Yes |
Page 1 of 1
bottom of page