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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|49716164|49717714|3|151,87,19|0,1348,1531 | circFAM117A(S3,S4L,4S) | FAM117A | LISLMWHLPSLVAWPVMRNIGVPPRSWHPPPTTKPPLQDTQPFLKMAAHLQSLPLLPPLDLIIATSSNGSPQKAVRKCVCLKKPHP | NIGVPPR | No | Alternative | Junction | 7 | 2 | TTG | TGA | TransCirc | No |
chr17|49828381|49828582|1|201|0 | circKAT7(NE) | KAT7 | MIESDFRISAHDSARQNGHPCQSLLLFSTVPHPPLQKPFHLH | MIESDFR | No | Alternative | Junction | 7 | 3 | ATG | TAG | NA | No |
chr17|50076583|50076681|1|98|0 | circITGA3(L1) | ITGA3 | LQMRAAFVSEQQQKLSRSSSRRSAGLTTSVRATCRCGQPSCQSSSRS | LSRSSSR | No | Alternative | Junction | 7 | 1 | TTG | TGA | TransCirc | No |
chr17|50134894|50135202|1|308|0 | NA | PPP1R9B | LPHGAEAQRPRAAEGWPGGRRTQAPADQTARLYTLQLLSLDWNGAGALPASANWGLLPAHGAPGWPLGLLTHLPQLQGPEGSYHRPP | AAEGWPGGRR | No | Alternative | Junction | 10 | 2 | TTG | TAA | NA | No |
chr17|50134894|50135202|1|308|0 | NA | PPP1R9B | LPHGAEAQRPRAAEGWPGGRRTQAPADQTARLYTLQLLSLDWNGAGALPASANWGLLPAHGAPGWPLGLLTHLPQLQGPEGSYHRPP | LPHGAEAQRPRAAEGWPGGR | No | Alternative | Junction | 20 | 2 | TTG | TAA | NA | Yes |
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