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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr17|28369288|28369428|1|140|0 | circVTN(NE) | VTN | LGTPSSSEMSGASRAPSMPPSPASTVRGRPTSSRAVLL | APSMPPSPASTVR | No | Alternative | Junction | 13 | 1 | CTG | TGA | TransCirc | No |
chr17|28369807|28370270|3|44,120,131|0,119,332 | circVTN(S1S) | VTN | LLWLTKSHARAAALRASTWTRSASVTSSALTTRAAAQTIRLSASPK | SHARAAALR | No | Alternative | Junction | 9 | 1 | TTG | TGA | TransCirc | No |
chr17|28620508|28620630|1|122|0 | circBLTP2(NE) | BLTP2 | LEISTNPAQYAMILDIVNNLLLHVEPKRKGLWIPSPLSTMSWKFPPTQLSMP | GLWIPSPLSTMSWK | No | Alternative | Junction | 14 | 3 | CTG | TGA | TransCirc | Yes |
chr17|29574451|29574674|1|223|0 | circGIT1(NE) | GIT1 | LVPTPVEPLRMGRWGGRSFCPPHSMHLPSVYSISPLPRTSLAIGAGPLQTLIPTPTEPLAQVPLVLPHSLAARCPGAHPCRAPKDGEVGGQELLSPTFHAPPLCI | LVPTPVEPLRMGR | No | Alternative | Junction | 13 | 2 | CTG | TAG | NA | Yes |
chr17|30490125|30492753|2|92,75|0,2553 | circGOSR1(NE,NE) | GOSR1 | MAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRKIIHMNSIKPKQTLWQYGKGRILWDQYEKILSHIKVGLE | ILWDQYEK | No | Alternative | Junction | 8 | 1 | ATG | TAA | TransCirc | Yes |
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