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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr16|89740803|89742938|2|37,139|0,1996 | circFANCA(NE,NE).A | FANCA | LHFAIQQVREENIRKQLKKLDCEREELDGPAVVTSDLKFSSPLRLPPQHPTRTGSQLLHCTLRFNKSGKKTSGSS | TGSQLLHCTLR | No | Alternative | Junction | 11 | 2 | CTG | TAA | NA | Yes |
chr16|89740803|89742938|2|63,139|0,1996 | circFANCA(NE,NE).B | FANCA | LALSCCTALCDSTSQGRKHQEAAKEAGLRERGAIGFPFLLLLDGPAVVTSDLKFSSPLRLPPQHPTRTGSQLLHCTLRFNKSGKKTSGSS | ERGAIGFPFLLLLDGPAVVTSDLK | No | Alternative | Junction | 24 | 1 | CTG | TAA | TransCirc | Yes |
chr16|89740803|89742938|2|63,139|0,1996 | circFANCA(NE,NE).B | FANCA | LALSCCTALCDSTSQGRKHQEAAKEAGLRERGAIGFPFLLLLDGPAVVTSDLKFSSPLRLPPQHPTRTGSQLLHCTLRFNKSGKKTSGSS | GAIGFPFLLLLDGPAVVTSDLK | No | Alternative | Junction | 22 | 1 | CTG | TAA | TransCirc | Yes |
chr16|89740803|89742938|2|63,139|0,1996 | circFANCA(NE,NE).B | FANCA | LALSCCTALCDSTSQGRKHQEAAKEAGLRERGAIGFPFLLLLDGPAVVTSDLKFSSPLRLPPQHPTRTGSQLLHCTLRFNKSGKKTSGSS | GAIGFPFLLLLDGPAVVTSDLKFSSPLR | No | Junction | Junction | 28 | 1 | CTG | TAA | TransCirc | Yes |
chr16|89784859|89785024|1|165|0 | circFANCA(NE) | FANCA | LPRWCSRAWLSWASRSSLHTGLLWEHTRLPWLQQEGPGLPVYVLVRTRAF | WCSRAWLSWASR | No | Alternative | Alternative | 12 | 3 | CTG | TGA | TransCirc | Yes |
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