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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr13|28174271|28177935|4|30,47,67,71|0,75,2221,3593 | circPAN3(S1,L1S,2,3) | PAN3 | MDGGALTVNGFGSPVETKYPLMQRMTNSSSSPSLLNDSAKPYSAHDPLTSPASSLFNDFGALNISQRRKFQEWMEVL | MDGGALTVNGFGSPVETKYPLMQR | No | Alternative | Junction | 24 | 3 | ATG | TAA | riboCIRC,TransCirc | Yes |
chr13|32732100|32735330|2|116,34|0,3196 | circPDS5B(NE,NE) | PDS5B | LFYITNLKKDPPVKPNMPFIVSMRYFLVKRPSLHRFHCERSSHE | KDPPVKPNMPFIVSMR | Yes | Alternative | Junction | 16 | 3 | CTG | TGA | riboCIRC | Yes |
chr13|32732100|32735330|2|116,34|0,3196 | circPDS5B(NE,NE) | PDS5B | LFYITNLKKDPPVKPNMPFIVSMRYFLVKRPSLHRFHCERSSHE | RPSLHRFHCER | Yes | Alternative | Junction | 11 | 3 | CTG | TGA | riboCIRC | Yes |
chr13|97990125|97992960|3|97,105,69|0,307,2766 | circIPO5(NE,NE,NE) | IPO5 | MLVQCMQDQEHPSIRTLSARATAAFILANEHNVALFKHFADLLPGFLQAVNDSCYQNDDSVLKSLVEIADTELSWNFWEPATTLFRCHQTNVSSVYARSGTPVDQDVIC | CHQTNVSSVYARSGTPVDQDVIC | No | Alternative | Junction | 23 | 2 | ATG | TAG | TransCirc | Yes |
chr14|100329819|100330013|1|194|0 | circSLC25A47(NE) | SLC25A47 | LMRALSCMESVVHPSLPMALASHVFEAPLQGVRCVLSHLTSGRGARQPSARVGLGWQEPGRSGPL | CVLSHLTSGRGAR | No | Junction | Junction | 13 | 2 | TTG | TGA | NA | No |
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