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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|143745216|143760658|2|97,58|0,15384 | NA | ENST00000442049 | LYFLHKLQHGSISHHLFWSKGRNEHPGNQSSSQRRIPETPPTCLNQISRGSDCTFSTSFSMAVSLTTCFGPRAEMSILETNQVLREEYRRLPRLA | NEHPGNQSSSQRR | Yes | Alternative | Junction | 13 | 2 | TTG | TGA | NA | No |
chr1|145994280|145994437|1|157|0 | circTXNIP(NE) | TXNIP | LPLVIGSRSGLSSRTSSMASRTSSEMSWVDLNIPDTPEDLC | TSSMASRTSSEMSWVDLNIPDTPEDLC | No | Junction | Junction | 27 | 1 | CTG | TAG | TransCirc | Yes |
chr1|148532624|148532793|1|169|0 | NA | NBPF14 | LNHVSLGSYKIPQGFHFAGMSLSFYTCSRSLSSLCLAHPKVLPVQHMPGVISQTF | IPQGFHFAGMSLSFYTCSRSLSSLCLAHPK | No | Alternative | Junction | 30 | 3 | TTG | TAA | NA | Yes |
chr1|154435974|154436110|1|136|0 | circIL6R(NE).A | IL6R | LCHPRRLERPEARGAASCPGGVRARRVERVEPGGHGHALDRTSSITVSSTTPGAA | GAASCPGGVRAR | No | Alternative | Junction | 12 | 3 | CTG | TGA | TransCirc | No |
chr1|154435974|154436110|1|136|0 | circIL6R(NE).A | IL6R | LCHPRRLERPEARGAASCPGGVRARRVERVEPGGHGHALDRTSSITVSSTTPGAA | VEPGGHGHALDR | No | Alternative | Junction | 12 | 3 | CTG | TGA | TransCirc | No |
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