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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
​*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|10413082|10417466|3|169,131,91|0,3904,4293 | circPGD(NE,2,3S) | PGD | LIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYDRARLIPD | IISYAQGFMLLRQAATEFGWTLNYDR | No | Junction | Junction | 26 | 1 | CTG | TGA | TransCirc | Yes |
chr1|1055654|1055831|1|177|0 | circAGRN(NE).B | AGRN | LPHCKSSPQRQSSLWDGVDLCRLPGYLGLAMAVFFMC | QSSLWDGVDLCR | No | Junction | Junction | 12 | 2 | CTG | TGA | NA | Yes |
chr1|1055654|1055872|1|218|0 | circAGRN(NE).C | AGRN | LEWWVSSFPSRLRAAEGCLTANPPHSVSESRPCLRMTRGQPELTVGWG | AAEGCLTANPPHSVSESRPCLRMTR | No | Alternative | Junction | 25 | 3 | CTG | TGA | NA | Yes |
chr1|116401129|116401260|1|131|0 | circATP1A1(1) | ATP1A1 | LVICKTRRNSVFQQGMKPMSRGKSWSSPATQPSSSVSWWCSGPTWSSVRPGGIRSSSRG | GKSWSSPATQPSSSVSWWCSGPTWSSVRPGGIR | No | Alternative | Junction | 33 | 1 | TTG | TGA | TransCirc | Yes |
chr1|117402185|117442325|4|106,41,81,95|0,12605,18383,40045 | circMAN1A2(NE,L1,NE,2) | MAN1A2 | LAEKLLPAFNTPTGIPWAMVNLKREEEERLRNKIRADHEKALEEAKEKLRKSREEIRAEMGKDGLKTTLISV | EEIRAEMGK | No | Alternative | Junction | 9 | 1 | TTG | TGA | riboCIRC,TransCirc | No |
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