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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr12|55719090|55719223|1|133|0 | circENSG00000258311,BLOC1S1(NE) | ENSG00000258311,BLOC1S1 | MNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKCGPGLHEPEKAGP | QTGQWIGMVENFNQALKCGPGLHEPEK | No | Junction | Junction | 27 | 2 | ATG | TGA | NA | Yes |
chr12|55831349|55831574|1|225|0 | circTMEM198B(NE) | TMEM198B | LSLLNSSSQTLGRKSPTNILRGGASGYQDVRCLWAKSLLIP | LSLLNSSSQTLGR | No | Junction | Junction | 13 | 3 | CTG | TGA | NA | Yes |
chr12|55831349|55831574|1|225|0 | circTMEM198B(NE) | TMEM198B | MSVGKVPAYSMRGCGIRTVAGCLFLQQLHLSMKLRL | MSVGKVPAYSMR | No | Alternative | Alternative | 12 | 2 | ATG | TAA | NA | Yes |
chr12|56571697|56581508|3|158,80,110|0,9486,9701 | NA | RBMS2 | LARLSPPVSFEIPVGPAEVLALQGWSPQRSVKPSSPTLMENILRHPLEYQPHPIPCFANLLMAGQRNDRTKENLCKMDGLGQGMQTCNRNRTPQIYTSQTSHCQWMSRNWRGC | NRTPQIYTSQTSHCQWMSR | No | Alternative | Junction | 19 | 2 | TTG | TGA | TransCirc | Yes |
chr12|56571697|56581508|3|158,80,110|0,9486,9701 | NA | RBMS2 | LARLSPPVSFEIPVGPAEVLALQGWSPQRSVKPSSPTLMENILRHPLEYQPHPIPCFANLLMAGQRNDRTKENLCKMDGLGQGMQTCNRNRTPQIYTSQTSHCQWMSRNWRGC | SVKPSSPTLMENILR | No | Alternative | Junction | 15 | 2 | TTG | TGA | TransCirc | Yes |
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