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Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|6228749|6229061|1|312|0 | circT036641(S2S) | T036641 | MWLSLKFCGRKASAPGGEGIPEQWEHSPSYPVAARAKAEPETLQRALGGAEVTTWVRDGGCTQPRA | KASAPGGEGIPEQWEHSPSYPVAAR | No | Alternative | Alternative | 25 | 2 | ATG | TGA | NA | Yes |
chr10|7797046|7802854|2|105,57|0,5751 | circATP5F1C(NE,S2) | ATP5F1C | LKLSLVLQLFTRRLKSIKNIQKITKSMKMVAAAKYARAERELKPAAKLSSQKS | LSLVLQLFTRR | No | Junction | Junction | 11 | 3 | TTG | TGA | riboCIRC,TransCirc | Yes |
chr10|7797046|7802854|2|95,69|0,5739 | circATP5F1C(NE,S2).E | ATP5F1C | LKLSLVLQLFTRRLKSIKNIQKITKSMKMVAAAKYARAEREIQPYPPSCHHKRVD | AEREIQPYPPSCHHK | No | Alternative | Junction | 15 | 2 | TTG | TGA | riboCIRC,TransCirc | No |
chr10|7797046|7802854|2|95,69|0,5739 | circATP5F1C(NE,S2).E | ATP5F1C | LKLSLVLQLFTRRLKSIKNIQKITKSMKMVAAAKYARAEREIQPYPPSCHHKRVD | EIQPYPPSCHHK | No | Alternative | Junction | 12 | 2 | TTG | TGA | riboCIRC,TransCirc | No |
chr10|7797046|7802854|2|95,69|0,5739 | circATP5F1C(NE,S2).E | ATP5F1C | LKLSLVLQLFTRRLKSIKNIQKITKSMKMVAAAKYARAEREIQPYPPSCHHKRVD | EIQPYPPSCHHKR | No | Alternative | Junction | 13 | 2 | TTG | TGA | riboCIRC,TransCirc | No |
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