top of page
Long-Read CircRNA Encoded Peptides
Use criteria below to search among 994 circRNA peptides detected by long-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Long-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|number of exons|exon sizes|exon offsets"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Short-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|103438014|103438808|3|57,115,123|0,196,671 | circPDCD11(NE,NE,NE) | PDCD11 | LRGYVGSIQPHGVFFRCYILSTADNVLTLSLRSSRKAEAVQIAARILSAQALVFHGKGQISRCGCPRLQMVVLNKPGDEKQSRRSRD | GYVGSIQPHGVFFRCYILSTADNVLTLSLR | No | Junction | Junction | 30 | 3 | CTG | TAA | NA | Yes |
chr10|103438014|103438808|3|57,115,123|0,196,671 | circPDCD11(NE,NE,NE) | PDCD11 | LSTADNVLTLSLRSSRKAEAVQIAARILSAQALVFHGKGQISRCGCPRLQMVVLNKPGDEKQSRRSRD | LQMVVLNKPGDEKQSR | No | Alternative | Junction | 16 | 2 | CTG | TAA | NA | Yes |
chr10|1124217|1125024|2|107,69|0,738 | circWDR37(2S,S3) | WDR37 | LICQECAWRGFPGAADSTVTSAVFTVGDNVVSGSDDRTVKVWDLKNMRSPIAKPTSETV | GFPGAADSTVTSAVFTVGDNVVSGSDDR | No | Junction | Junction | 28 | 1 | TTG | TGA | TransCirc | Yes |
chr10|112964555|113089540|3|69,102,141|0,75469,124844 | NA | TCF7L2 | LMSRQGASRVDKPSRMPGPHHRHTLSAPSLAALRDMTVSTSTPPQTSLSALKSSGT | DMTVSTSTPPQTSLSALK | No | Alternative | Junction | 18 | 2 | TTG | TGA | NA | Yes |
chr10|112964555|113089540|3|69,102,141|0,75469,124844 | NA | TCF7L2 | LMSRQGASRVDKPSRMPGPHHRHTLSAPSLAALRDMTVSTSTPPQTSLSALKSSGT | MPGPHHRHTLSAPSLAALR | No | Alternative | Junction | 19 | 2 | TTG | TGA | NA | Yes |
Page 1 of 1
bottom of page