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McDonnell Genome Institute
Washington University
Transcript
lnc-TMPRSS2-83:1
Chromosome
chr21
Gene Name
lnc-TMPRSS2-83
Start
41141497
CPC Label
coding
End
41237583
Cancer
BRCA-Basal-like
Strand
-
Peptide
VTGEVLTWPAESLAMP
Modified Peptide
n[145]VTGEVLTWPAESLAM[147]P
Peptide Length
16
ORF Length
128
Open Reading Frame (ORF)
LVDLTISVDSSSIRSGQAMPEVIPRASFPSWPTSSHQEVPRAPPSGSGPHRPTPHLLQGVCGGPHHCHPLLVLTGVPASFLGLLPTSSHHSPITVKSEGVSPPPPMALTSPRVTGEVLTWPAESLAMP
Conservation Score
0.208
PhyloCSF Frame 1
-4.285
No. of Spectra
16
CPC Coding Probability
0.7349
PhyloCSF Frame 2
-3.337
CNTI Index
coding
Max Probability
0.9959
PhyloCSF Frame 3
-3.005
CNTI Score
0.687851006
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