top of page
McDonnell Genome Institute
Washington University
Transcript
lnc-TFCP2-4:1
Chromosome
chr12
Gene Name
lnc-TFCP2-4
Start
51198639
CPC Label
noncoding
End
51217667
Cancer
BRCA-HER2-enriched
Strand
-
Peptide
VLEVGVDAQLPAEEESK
Modified Peptide
n[145]VLEVGVDAQLPAEEESK
Peptide Length
17
ORF Length
97
Open Reading Frame (ORF)
MDPGAGSETSLTVNEQVIVMSGHETIRVLEVGVDAQLPAEEESKGLEGVAAEGSQSGDPAEASQAAGEAGPDNLGSSAEATVLQVKWLVSRGWPCGQ
Conservation Score
1
PhyloCSF Frame 1
9.914
No. of Spectra
2
CPC Coding Probability
0.0903965
PhyloCSF Frame 2
1.923
CNTI Index
noncoding
Max Probability
1
PhyloCSF Frame 3
5.313
CNTI Score
-0.287072297
bottom of page