top of page
McDonnell Genome Institute
Washington University
Transcript
lnc-SPOCD1-4:2
Chromosome
chr1
Gene Name
lnc-SPOCD1-4
Start
31785242
CPC Label
noncoding
End
31788606
Cancer
BRCA-Luminal A
Strand
-
Peptide
DSSVSTCVGGNK
Modified Peptide
n[145]DSSVSTCVGGNK
Peptide Length
12
ORF Length
133
Open Reading Frame (ORF)
LRCLGWSRTGMEGRLRAETAWRATCLFLYQRGLGNPGATPLPFLSLSFPVVGSKDSSVSTCVGGNKSAQYGEPSRCCSYVTVPWREFPVLCTVQAEAERDPLSVLDRSSRIPGGSCSFKNWGWLLSCVEEDCW
Conservation Score
0.983
PhyloCSF Frame 1
-3.73
No. of Spectra
1
CPC Coding Probability
0.363691
PhyloCSF Frame 2
-1.591
CNTI Index
noncoding
Max Probability
0.7141
PhyloCSF Frame 3
-3.398
CNTI Score
-0.327442335
bottom of page