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McDonnell Genome Institute
Washington University
Transcript
lnc-SPANXB1-3:1
Chromosome
chrX
Gene Name
lnc-SPANXB1-3
Start
141138477
CPC Label
noncoding
End
141139174
Cancer
BRCA-Basal-like
Strand
+
Peptide
ESDIMTGSRVAMVPAQGK
Modified Peptide
n[145]ESDIMTGSRVAM[147]VPAQGK
Peptide Length
18
ORF Length
89
Open Reading Frame (ORF)
MPRESDIMTGSRVAMVPAQGKRCYDRKQSGYGGQTKPIFWKKAKTTKKIVLRLECVEPNCRSKRTLAIKRCKHFELGGDKKRKGQVIQF
Conservation Score
1
PhyloCSF Frame 1
0
No. of Spectra
1
CPC Coding Probability
0.2644
PhyloCSF Frame 2
0
CNTI Index
noncoding
Max Probability
0.8569
PhyloCSF Frame 3
0
CNTI Score
-0.357168443
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