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McDonnell Genome Institute
Washington University
Transcript
lnc-EGR1-2:1
Chromosome
chr5
Gene Name
lnc-EGR1-2
Start
138620328
CPC Label
noncoding
End
138620964
Cancer
BRCA-Luminal B
Strand
+
Peptide
FPSLLMYSEDMVAK
Modified Peptide
n[145]FPSLLM[147]YSEDM[147]VAK
Peptide Length
14
ORF Length
115
Open Reading Frame (ORF)
LKSTRRPRFSTCVLGDQQHRVEAKPVGISYVDIEVLKKLDRNKKLLNKYDAFLASGSLIKQIPQILGPGLNKEGRFPSLLMYSEDMVAKVDEGKSTIKFQVKKGLCLAWLLVVSR
Conservation Score
1
PhyloCSF Frame 1
0
No. of Spectra
1
CPC Coding Probability
0.0368087
PhyloCSF Frame 2
0
CNTI Index
coding
Max Probability
0.6544
PhyloCSF Frame 3
0
CNTI Score
0.711022603
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