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McDonnell Genome Institute
Washington University
Transcript
lnc-COL21A1-4:1
Chromosome
chr6
Gene Name
lnc-COL21A1-4
Start
56642186
CPC Label
noncoding
End
56642889
Cancer
BRCA-HER2-enriched
Strand
-
Peptide
NIVSGIK
Modified Peptide
n[145]NIVSGIK
Peptide Length
7
ORF Length
102
Open Reading Frame (ORF)
LKGERKNIVSGIKMHSSSYSYRSSDSVFSNTTSTRTSLDSNENLLLVHCGPTLINSCISFGSESFDGHRLEMLQQIANRVQRDSVICEDKLILAGNALQSVS
Conservation Score
1
PhyloCSF Frame 1
-4.424
No. of Spectra
1
CPC Coding Probability
0.332887
PhyloCSF Frame 2
9.029
CNTI Index
coding
Max Probability
0.0753
PhyloCSF Frame 3
9.853
CNTI Score
0.571638977
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