Consequential variants from upstream, downstream and out-of-frame ORFs

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Canonical variant	Varaint	Noncanonical consequence	Protein position	Amino acids	Codons	Consequnce type	ncORF overlapping canonical	Chr	Start	Stop
Silent	chr2:88978750	stop_gained	54	L/*	tTg/tAg	Consequential_in_ncORF_only	Overlapping	2	88978746	88979079
Missense	chr2:88978963	missense_variant	39	F/L	ttC/ttA	Consequential_in_both_canonical_and_ncORF	Overlapping	2	88978746	88979079
Silent	chr2:88992849	missense_variant	23	P/S	Cct/Tct	Consequential_in_ncORF_only	Overlapping	2	88992605	88992915
Intron	chr2:88992661	missense_variant	44	L/I	Ctc/Atc	Consequential_in_ncORF_only	Not_overlapping	2	88992605	88992915
5'Flank	chr2:88992893	missense_variant	8	R/K	aGg/aAg	Consequential_in_ncORF_only	Not_overlapping	2	88992605	88992915

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