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Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Peptide length | Core peptide | HLA-allele | Cancer | Chr | Start | End | NetMHCpan prediction score | Gene has predicted canoncial neoantigens | Low expression in normal tissue | Strand | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LDLRAD2 | NM_001013693.2 | TLGPIPSAR | n[145]TLGPIPSAR | 9 | TLGPIPSAR | HLA-A33:03 | OV | 1 | 21824051 | 21824233 | 0.73982 | No | no | + | 3'UTR |
SUPT7L | ENST00000337768.9 | TSSLPFWSLK | n[145]TSSLPFWSLK | 10 | TSSLPFSLK | HLA-A11:01 | OV | 2 | 27651551 | 27651709 | 0.579151 | Yes | no | - | 3'UTR |
SUPT7L | ENST00000404798.6 | TSSLPFWSLK | n[145]TSSLPFWSLK | 10 | TSSLPFSLK | HLA-A11:01 | OV | 2 | 27651551 | 27651709 | 0.579151 | Yes | no | - | 3'UTR |
SUPT7L | NM_001282729.1 | TSSLPFWSLK | n[145]TSSLPFWSLK | 10 | TSSLPFSLK | HLA-A11:01 | OV | 2 | 27651551 | 27651709 | 0.579151 | Yes | no | - | 3'UTR |
SUPT7L | NM_001282730.1 | TSSLPFWSLK | n[145]TSSLPFWSLK | 10 | TSSLPFSLK | HLA-A11:01 | OV | 2 | 27651551 | 27651709 | 0.579151 | Yes | no | - | 3'UTR |
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