Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer

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Gene
Transcript
Peptide
Modified peptide
Peptide length
Core peptide
HLA-allele
Cancer
Chr
Start
End
NetMHCpan prediction score
Gene has predicted canoncial neoantigens
Low expression in normal tissue
Strand
Type
LDLRAD2
NM_001013693.2
TLGPIPSAR
n[145]TLGPIPSAR
9
TLGPIPSAR
HLA-A33:03
OV
1
21824051
21824233
0.73982
No
no
+
3'UTR
SUPT7L
ENST00000337768.9
TSSLPFWSLK
n[145]TSSLPFWSLK
10
TSSLPFSLK
HLA-A11:01
OV
2
27651551
27651709
0.579151
Yes
no
-
3'UTR
SUPT7L
ENST00000404798.6
TSSLPFWSLK
n[145]TSSLPFWSLK
10
TSSLPFSLK
HLA-A11:01
OV
2
27651551
27651709
0.579151
Yes
no
-
3'UTR
SUPT7L
NM_001282729.1
TSSLPFWSLK
n[145]TSSLPFWSLK
10
TSSLPFSLK
HLA-A11:01
OV
2
27651551
27651709
0.579151
Yes
no
-
3'UTR
SUPT7L
NM_001282730.1
TSSLPFWSLK
n[145]TSSLPFWSLK
10
TSSLPFSLK
HLA-A11:01
OV
2
27651551
27651709
0.579151
Yes
no
-
3'UTR
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