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TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

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​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

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*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr8|125003175|125007487|+|3|circRNA|SQLE|NM_003129|2,3,4
Not cell-type specific
N/A
Not differentially expressed
HCT116,HT29,SW620
Not differentially expressed
Not cell-type specific
chr8|125008970|125009343|+|2|circRNA|SQLE|NM_003129|5,6
Not cell-type specific
N/A
Not differentially expressed
HT29,SW480,SW620
Not differentially expressed
Not cell-type specific
chr8|126707182|126709147|+|2|circRNA|RP11-89K10.1|ENST00000519880.5|3,4
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr8|127890588|127890998|+|1|circRNA|PVT1|NR_003367|2
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr8|128009589|128010444|+|2|circRNA|PVT1|ENST00000522875.5|4,5
Stromal cells
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not supported
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