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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr16|19616113|19616808|+|2|circRNA|C16orf62|ENST00000438132.7|13,14 | Not cell-type specific | CRAMS359 | Downregulated in MvN | HCT116 | CIRIquant | Not cell-type specific |
chr16|19616113|19647882|+|12|circRNA|C16orf62|ENST00000438132.7|13,14,15,16,17,18,19,20,21,22,23,24 | Not cell-type specific | CRAMS22 | Downregulated in MvN | HCT116,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr16|31722625|31723353|+|2|circRNA|ZNF720|ENST00000529943.6|2,3 | Not cell-type specific | CRAMS29 | Downregulated in MvP | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
chr16|46674313|46677398|-|4|circRNA|VPS35|ENST00000299138.11|10,9,8,7 | Not cell-type specific | CRAMS340 | Downregulated in MvN | HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr16|47497398|47515601|+|5|circRNA|PHKB|ENST00000566037.6|3,4,5,6,7 | Not cell-type specific | CRAMS204 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
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