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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr15|43334944|43335826|+|2|circRNA|ADAL|NM_001012969|3,4 | Not cell-type specific | CRAMS71 | Downregulated in MvN,Downregulated in MvP | HT29 | CIRIquant & CircTest | Not cell-type specific |
chr15|44615362|44620403|-|2|circRNA|SPG11|ENST00000261866.11|16,15 | Not cell-type specific | CRAMS329 | Downregulated in MvN | HCT116,LoVo,SW480 | CircTest | Not cell-type specific |
chr15|55223888|55234956|-|4|circRNA|RAB27A|NM_183234|6,5,4,3 | Not cell-type specific | CRAMS324 | Downregulated in MvN | LoVo | Not supported | Not cell-type specific |
chr15|58912562|58916999|-|3|circRNA|SLTM|ENST00000380516.6|5,4,3 | Not cell-type specific | CRAMS118 | Downregulated in PvN,Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr15|62033440|62044255|-|4|circRNA|VPS13C|ENST00000249837.7|5,4,3,2 | Not cell-type specific | CRAMS48 | Downregulated in MvN,Downregulated in MvP | HT29,LoVo,SW480 | CIRIquant & CircTest | Not cell-type specific |
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