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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr19|50398850|50399484|+|2|circRNA|POLD1|ENST00000600859.5|2,3 | Not cell-type specific | CRAMS245 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr19|5047475|5082504|+|4|circRNA|KDM4B|ENST00000611640.4|6,7,8,9 | Not cell-type specific | CRAMS144 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr19|58392975|58393487|+|2|circRNA|RPS5|ENST00000601521.5|4,5 | Not cell-type specific | CRAMS5 | Downregulated in MvP | HT29,LoVo,SW480 | CIRIquant | Not cell-type specific |
chr19|8455404|8463686|+|4|circRNA|HNRNPM|ENST00000348943.7|2,3,4,5 | Not cell-type specific | CRAMS150 | Downregulated in MvN | HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr1|112653597|112659779|+|4|circRNA|CAPZA1|ENST00000263168.3|4,5,6,7 | Not cell-type specific | CRAMS296 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
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