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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr19|11113277|11113762|+|2|circRNA|LDLR|ENST00000558518.5|9,10 | Not cell-type specific | CRAMS20 | Upregulated in PvN | HCT116,HT29,LoVo,SW620 | CIRIquant | Not cell-type specific |
chr19|11335446|11335783|-|2|circRNA|RAB3D|ENST00000222120.7|4,3 | Not cell-type specific | CRAMS323 | Downregulated in MvN | Not expressed in cell lines | CIRIquant & CircTest | Not cell-type specific |
chr19|11513055|11514221|-|2|circRNA|ECSIT|NM_001243204|4,3 | Not cell-type specific | CRAMS356 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr19|18175039|18175697|+|3|circRNA|PIK3R2|ENST00000593731.1|20,21,22 | Not cell-type specific | CRAMS112 | Upregulated in PvN,Upregulated in MvN | HT29,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
chr19|18537600|18538436|-|2|circRNA|FKBP8|ENST00000597960.7|6,5 | Not cell-type specific | CRAMS276 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
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