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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr18|12356693|12371691|-|8|circRNA|AFG3L2|NM_006796|9,8,7,6,5,4,3,2 | Not cell-type specific | CRAMS171 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr18|21765771|21804014|+|9|circRNA|MIB1|ENST00000578646.5|2,3,4,5,6,7,8,9,10 | Not cell-type specific | CRAMS185 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr18|21765771|21819646|+|11|circRNA|MIB1|ENST00000578646.5|2,3,4,5,6,7,8,9,10,11,12 | Not cell-type specific | CRAMS239 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr18|24196124|24239382|-|3|circRNA|OSBPL1A|ENST00000319481.7|18,17,16 | Not cell-type specific | CRAMS176 | Downregulated in MvN | Not expressed in cell lines | CIRIquant & CircTest | Not cell-type specific |
chr18|36026899|36033837|-|5|circRNA|RPRD1A|ENST00000590898.5|7,6,5,4,3 | Not cell-type specific | CRAMS79 | Downregulated in PvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
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