top of page
CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr17|20204332|20205912|+|1|circRNA|SPECC1|NM_001243439|4 | Not cell-type specific | CRAMS32 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
chr17|30484213|30492753|+|4|circRNA|GOSR1|ENST00000225724.9|3,4,5,6 | Not cell-type specific | CRAMS101 | Downregulated in MvN | HCT116,LoVo,SW480 | CIRIquant & CircTest | Not cell-type specific |
chr17|32030655|32031458|+|2|circRNA|LRRC37B|ENST00000543378.6|7,8 | Not cell-type specific | CRAMS321 | Downregulated in MvN | Not expressed in cell lines | CircTest | Not cell-type specific |
chr17|4066446|4072756|-|4|circRNA|ZZEF1|NM_015113|28,27,26,25 | Not cell-type specific | CRAMS283 | Downregulated in MvN | HCT116,HT29,LoVo,SW620 | CIRIquant | Not cell-type specific |
chr17|42727634|42730918|-|3|circRNA|EZH1|ENST00000428826.6|4,3,2 | Not cell-type specific | CRAMS310 | Downregulated in MvN | HCT116,LoVo,SW480 | CircTest | Not cell-type specific |
Page 1 of 1
bottom of page