top of page
CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr20|51725818|51729978|-|2|circRNA|ATP9A|ENST00000311637.9|3,2 | Not cell-type specific | CRAMS215 | Upregulated in MvN | HT29,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
chr20|63202286|63203807|-|1|circRNA|YTHDF1|ENST00000370339.7|4 | Not cell-type specific | CRAMS142 | Upregulated in MvN | HCT116,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
chr16|53873785|53888951|+|3|circRNA|FTO|NM_001080432|5,6,7 | Not cell-type specific | CRAMS330 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr16|66938036|66939358|+|2|circRNA|CES2|ENST00000417689.5|2,3 | Not cell-type specific | CRAMS325 | Downregulated in MvN | LoVo,SW480 | CIRIquant | Not cell-type specific |
chr16|70565064|70567536|+|3|circRNA|SF3B3|ENST00000302516.9|19,20,21 | Not cell-type specific | CRAMS141 | Downregulated in MvN | HT29,LoVo,SW480 | CircTest | Not cell-type specific |
Page 1 of 1
bottom of page