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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr2|72465159|72480750|-|2|circRNA|EXOC6B|ENST00000272427.10|18,17 | Not cell-type specific | CRAMS287 | Downregulated in MvN | HCT116,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr2|72718102|72733118|-|4|circRNA|EXOC6B|ENST00000272427.10|6,5,4,3 | Not cell-type specific | CRAMS149 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr2|85368685|85371562|+|4|circRNA|ELMOD3|ENST00000409013.7|7,8,9,10 | Not cell-type specific | CRAMS167 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr2|8770669|8776892|-|2|circRNA|KIDINS220|ENST00000496383.5|15,14 | Not cell-type specific | CRAMS36 | Downregulated in MvN,Downregulated in MvP | HT29,SW480 | CIRIquant & CircTest | Not cell-type specific |
chr2|88782733|88792494|+|9|circRNA|ANKRD36BP2|ENST00000622311.4|4,5,6,7,8,9,10,11,12 | Not cell-type specific | CRAMS43 | Downregulated in MvN,Downregulated in MvP | Not expressed in cell lines | CIRIquant | Not cell-type specific |
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